Codes here !
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sounds like you're uploading via phpmyadmin? If you have ssh access to your server, the easiest way to get around that limit is to log into your server, then log into mysql (type mysql -username yourusername -p and you will be prompted for password) assuming you've uploaded the .sql file, you would then be able to do 'use DatabaseNameGoesHere;' and 'source /path/to/sql/file.sql;' to run the sql file. If the database doesn't exist, you may have to 'create database WhateverYouWantToCallIt;' first.
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